OBO Foundry dashboard analysis¶

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/tmp/ipykernel_649/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    4
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 195884.75 383077.474400 2.0 1118.00 6544.0 201310.75 770449.0
EquivalentClasses 4 68.50 70.920143 1.0 25.75 54.0 96.75 165.0
Declaration 4 169101.50 336520.193476 2.0 330.50 1262.0 170033.00 673880.0
SubObjectPropertyOf 3 58.50 109.734528 0.0 1.50 5.5 62.50 223.0
SubClassOf 3 336914.00 672223.864073 0.0 327.75 1203.5 337789.75 1345249.0
ObjectPropertyRange 2 18.00 30.897681 0.0 0.00 4.0 22.00 64.0
ObjectPropertyDomain 2 18.50 31.890437 0.0 0.00 4.0 22.50 66.0
InverseObjectProperties 2 11.00 20.049938 0.0 0.00 1.5 12.50 41.0
TransitiveObjectProperty 2 5.25 9.215024 0.0 0.00 1.0 6.25 19.0
DisjointClasses 2 6.25 11.842719 0.0 0.00 0.5 6.75 24.0
DataPropertyRange 2 1.50 1.914854 0.0 0.00 1.0 2.50 4.0
AsymmetricObjectProperty 2 2.25 3.304038 0.0 0.00 1.0 3.25 7.0
DataPropertyDomain 2 1.75 2.362908 0.0 0.00 1.0 2.75 5.0
AnnotationPropertyRangeOf 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
DifferentIndividuals 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
IrrefexiveObjectProperty 1 2.25 4.500000 0.0 0.00 0.0 2.25 9.0
FunctionalObjectProperty 1 1.25 2.500000 0.0 0.00 0.0 1.25 5.0
EquivalentObjectProperties 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
ReflexiveObjectProperty 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0
Rule 1 6.25 12.500000 0.0 0.00 0.0 6.25 25.0
SubAnnotationPropertyOf 1 4.75 9.500000 0.0 0.00 0.0 4.75 19.0
ClassAssertion 1 6.50 13.000000 0.0 0.00 0.0 6.50 26.0
FunctionalDataProperty 1 1.00 2.000000 0.0 0.00 0.0 1.00 4.0
SubPropertyChainOf 1 18.25 36.500000 0.0 0.00 0.0 18.25 73.0
SymmetricObjectProperty 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0
InverseFunctionalObjectProperty 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 896355.75 1.787334e+06 3.0 1089.75 4033.5 899299.50 3577353.0
ObjectSomeValuesFrom 4 222055.25 4.434633e+05 1.0 184.75 485.0 222355.50 887250.0
ObjectAllValuesFrom 3 18.75 2.479751e+01 0.0 0.75 11.0 29.00 53.0
ObjectIntersectionOf 3 29403.75 5.848573e+04 0.0 72.75 241.5 29572.50 117132.0
ObjectComplementOf 2 11.25 1.703673e+01 0.0 0.00 4.5 15.75 36.0
ObjectExactCardinality 2 2.50 4.358899e+00 0.0 0.00 0.5 3.00 9.0
ObjectHasValue 2 5323.75 1.064283e+04 0.0 0.00 3.5 5327.25 21288.0
ObjectMinCardinality 2 2.00 2.828427e+00 0.0 0.00 1.0 3.00 6.0
ObjectUnionOf 2 10.25 1.332604e+01 0.0 0.00 6.5 16.75 28.0
DataExactCardinality 1 1.50 3.000000e+00 0.0 0.00 0.0 1.50 6.0
DataMinCardinality 1 0.25 5.000000e-01 0.0 0.00 0.0 0.25 1.0
ObjectHasSelf 1 0.25 5.000000e-01 0.0 0.00 0.0 0.25 1.0
ObjectOneOf 1 0.75 1.500000e+00 0.0 0.00 0.0 0.75 3.0
DataHasValue 1 5322.00 1.064400e+04 0.0 0.00 0.0 5322.00 21288.0

OBO Score (Experimental)

ontology score score_dash score_impact
0 apollo_sv 0.653 0.882 0.50
1 dron 0.539 0.973 0.25
2 omrse 0.485 0.838 0.25
3 tmp 0.113 0.282 0.00

OBO Score Summary

count mean std min 25% 50% 75% max
score 4.0 0.44750 0.233737 0.113 0.3920 0.512 0.56750 0.653
score_dash 4.0 0.74375 0.312924 0.282 0.6990 0.860 0.90475 0.973
score_impact 4.0 0.25000 0.204124 0.000 0.1875 0.250 0.31250 0.500

OBO dependency graph